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Chromosome
1
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8
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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910 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ABAT
ENSSSCG00000007909
ENSG00000183044
4-aminobutyrate aminotransferase, mitochondrial
Tissue enhanced
Detected in many
brain:
48.0
kidney:
43.5
liver:
29.0
ABCA5
ENSSSCG00000017255
ENSG00000154265
ATP binding cassette subfamily A member 5
Tissue enhanced
Detected in all
epididymis:
39.2
ABCB9
ENSSSCG00000009784
ENSG00000150967
ATP binding cassette subfamily B member 9
Tissue enhanced
Detected in many
brain:
15.6
ABCD2
ENSSSCG00000000781
ENSG00000173208
ATP binding cassette subfamily D member 2
Tissue enhanced
Detected in all
pineal gland:
15.2
ACBD7
ENSSSCG00000038184
ENSG00000176244
Acyl-CoA binding domain containing 7
Tissue enhanced
Detected in many
brain:
14.0
retina:
23.0
ACHE
ENSSSCG00000030303
ENSG00000087085
Acetylcholinesterase (Cartwright blood group)
Tissue enriched
Detected in many
brain:
39.3
ACTL6B
ENSSSCG00000007670
ENSG00000077080
Actin like 6B
Tissue enhanced
Detected in some
brain:
12.7
liver:
11.1
pituitary gland:
8.3
testis:
5.6
ADAM22
ENSSSCG00000015297
ENSG00000008277
ADAM metallopeptidase domain 22
Tissue enriched
Detected in many
brain:
51.4
ADAM23
ENSSSCG00000016131
ENSG00000114948
ADAM metallopeptidase domain 23
Tissue enhanced
Detected in many
brain:
34.4
vagus nerve:
14.1
ADCY1
ENSSSCG00000016726
ENSG00000164742
Adenylate cyclase 1
Group enriched
Detected in some
brain:
51.5
lens:
21.6
retina:
23.4
ADCY2
ENSSSCG00000017101
ENSG00000078295
Adenylate cyclase 2
Tissue enhanced
Detected in many
brain:
39.7
skeletal muscle:
38.1
ADCYAP1
ENSSSCG00000035186
ENSG00000141433
Pituitary adenylate cyclase-activating polypeptide precursor
Tissue enriched
Detected in some
brain:
22.4
ADCYAP1R1
ENSSSCG00000016672
ENSG00000078549
Pituitary adenylate cyclase-activating polypeptide type I receptor precursor
Group enriched
Detected in many
brain:
32.6
choroid plexus:
19.4
heart:
36.6
male glands:
36.8
ADD2
ENSSSCG00000020736
ENSG00000075340
Adducin 2
Tissue enhanced
Detected in some
brain:
29.2
cervix:
35.0
endometrium:
17.3
ovary:
15.1
retina:
17.8
ADGRB1
ENSSSCG00000035891
ENSG00000181790
Adhesion G protein-coupled receptor B1
Group enriched
Detected in many
adrenal gland:
29.7
brain:
32.9
ADGRB3
ENSSSCG00000004270
ENSG00000135298
Adhesion G protein-coupled receptor B3
Tissue enhanced
Detected in some
brain:
22.8
pineal gland:
14.5
retina:
8.2
AGTPBP1
ENSSSCG00000010957
ENSG00000135049
ATP/GTP binding protein 1
Tissue enhanced
Detected in all
brain:
24.7
AHI1
ENSSSCG00000004166
ENSG00000135541
Abelson helper integration site 1
Tissue enhanced
Detected in all
brain:
51.3
AIFM3
ENSSSCG00000010096
ENSG00000183773
Apoptosis inducing factor, mitochondria associated 3
Tissue enriched
Detected in many
choroid plexus:
59.5
AK5
ENSSSCG00000003773
ENSG00000154027
Adenylate kinase 5
Tissue enriched
Detected in many
brain:
71.0
ALDH5A1
ENSSSCG00000001090
ENSG00000112294
Succinate-semialdehyde dehydrogenase, mitochondrial
Tissue enhanced
Detected in all
liver:
38.4
AMER3
ENSSSCG00000016391
ENSG00000178171
APC membrane recruitment protein 3
Group enriched
Detected in some
brain:
15.1
pineal gland:
4.7
pituitary gland:
4.6
AMIGO1
ENSSSCG00000034883
ENSG00000181754
Adhesion molecule with Ig like domain 1
Low tissue specificity
Detected in all
ANKRD34B
ENSSSCG00000014124
ENSG00000189127
Ankyrin repeat domain 34B
Group enriched
Detected in some
brain:
26.1
endometrium:
7.6
pineal gland:
11.8
ANKRD34C
ENSSSCG00000032430
ENSG00000235711
Ankyrin repeat domain 34C
Tissue enriched
Detected in some
brain:
22.2
AP3B2
ENSSSCG00000001807
ENSG00000103723
Adaptor related protein complex 3 beta 2 subunit
Tissue enhanced
Detected in many
brain:
22.5
pineal gland:
16.2
retina:
13.5
AP3M2
ENSSSCG00000007033
ENSG00000070718
Adaptor related protein complex 3 mu 2 subunit
Tissue enhanced
Detected in all
brain:
20.1
pineal gland:
17.5
APC
ENSSSCG00000014207
ENSG00000134982
Adenomatous polyposis coli protein
Tissue enhanced
Detected in all
brain:
50.8
AQP11
ENSSSCG00000014880
ENSG00000178301
Aquaporin-11
Tissue enhanced
Detected in all
testis:
37.0
ARHGDIG
ENSSSCG00000038979
ENSG00000242173
Rho GDP dissociation inhibitor gamma
Tissue enriched
Detected in some
brain:
41.6
ASCL1
ENSSSCG00000034557
ENSG00000139352
Achaete-scute family bHLH transcription factor 1
Tissue enhanced
Detected in some
brain:
17.4
liver:
10.7
pituitary gland:
40.4
thyroid gland:
11.5
ASIC1
ENSSSCG00000000216
ENSG00000110881
Acid sensing ion channel subunit 1
Tissue enhanced
Detected in some
brain:
21.9
ASIC2
ENSSSCG00000040177
ENSG00000108684
Acid sensing ion channel subunit 2
Group enriched
Detected in some
brain:
18.5
ductus deferens:
10.5
epididymis:
14.5
retina:
13.3
ASIC4
ENSSSCG00000029968
ENSG00000072182
Acid sensing ion channel subunit family member 4
Tissue enhanced
Detected in some
brain:
11.9
pituitary gland:
14.0
retina:
24.4
ASTN1
ENSSSCG00000015513
ENSG00000152092
Astrotactin 1
Tissue enhanced
Detected in many
brain:
33.8
pineal gland:
12.0
pituitary gland:
15.2
ASTN2
ENSSSCG00000005502
ENSG00000148219
Astrotactin 2
Group enriched
Detected in many
brain:
31.8
cornea:
21.1
ATCAY
ENSSSCG00000026754
ENSG00000167654
ATCAY, caytaxin
Group enriched
Detected in some
brain:
33.1
pineal gland:
17.0
pituitary gland:
12.7
retina:
11.3
ATL1
ENSSSCG00000005020
ENSG00000198513
Atlastin GTPase 1
Tissue enhanced
Detected in many
brain:
22.9
pineal gland:
10.9
ATP13A2
ENSSSCG00000031082
ENSG00000159363
ATPase 13A2
Low tissue specificity
Detected in all
ATP1B2
ENSSSCG00000017951
ENSG00000129244
ATPase Na+/K+ transporting subunit beta 2
Group enriched
Detected in many
adrenal gland:
44.0
brain:
150.3
pineal gland:
114.3
retina:
78.2
ATP2B2
ENSSSCG00000023084
ENSG00000157087
ATPase plasma membrane Ca2+ transporting 2
Group enriched
Detected in some
brain:
74.8
choroid plexus:
38.2
ATP2B3
ENSSSCG00000012769
ENSG00000067842
ATPase plasma membrane Ca2+ transporting 3
Group enriched
Detected in some
adrenal gland:
25.3
brain:
25.9
choroid plexus:
33.3
ductus deferens:
15.0
pituitary gland:
13.8
ATP8A2
ENSSSCG00000035421
ENSG00000132932
ATPase phospholipid transporting 8A2
Tissue enhanced
Detected in all
brain:
29.4
pineal gland:
18.8
retina:
56.1
B3GALT1
ENSSSCG00000034351
ENSG00000172318
Beta-1,3-galactosyltransferase 1
Tissue enhanced
Detected in many
brain:
14.8
choroid plexus:
19.4
B4GALNT4
ENSSSCG00000033780
ENSG00000182272
Beta-1,4-N-acetyl-galactosaminyltransferase 4
Tissue enhanced
Detected in some
brain:
10.7
fallopian tube:
4.4
B4GALT6
ENSSSCG00000025005
ENSG00000118276
Beta-1,4-galactosyltransferase 6
Tissue enhanced
Detected in many
brain:
26.8
cartilage:
11.4
ovary:
13.8
pituitary gland:
12.2
BCAT1
ENSSSCG00000029163
ENSG00000060982
Branched chain amino acid transaminase 1
Tissue enhanced
Detected in many
choroid plexus:
91.8
BEGAIN
ENSSSCG00000036589
ENSG00000183092
Brain enriched guanylate kinase associated
Tissue enriched
Detected in some
brain:
27.2
BEND6
ENSSSCG00000001498
ENSG00000151917
BEN domain containing 6
Low tissue specificity
Detected in all
BICDL1
ENSSSCG00000009896
ENSG00000135127
BICD family like cargo adaptor 1
Tissue enhanced
Detected in many
epididymis:
91.2
mesothelial tissue:
29.5
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